Table of Permanova or Betadisper

This function create a table with the results of permanova or betadisper

beta_test_table(
  table,
  metadata,
  formula_str,
  method = "euclidean",
  test = c("permanova", "betadisper"),
  permutations = 999,
  strata_var = NULL,
  decimales = 3
)

Arguments

metadata

Data frame of characteristics or important information of the samples

formula_str

Model formula

method

Method for calculate pairwise distances of a matrix

test

Permanova or betadisper

permutations

Number of permutations required

strata_var

Group or variable within which permutations are restricted

decimales

Number of decimales required

matriz

Distance matrix or data frame with taxonomy, where, the columns are the samples and rows are ASV's or taxa.

Value

A table with the results of R2, F and p value

Examples

# Example using a data frame
beta_test_table(table = table,
                metadata = metadata,
                formula_str = "metodo*edad",
                method = "euclidean",
                test = "permanova",
                permutations = 999,
                strata_var = "Individuo")
#> Error in beta_test_table(table = table, metadata = metadata, formula_str = "metodo*edad",     method = "euclidean", test = "permanova", permutations = 999,     strata_var = "Individuo"): 'table' must be a matrix or dataframe

# Example using a matrix
beta_test_table(table = matriz,
                metadata = metadata,
                formula_str = "Origen",
                test = "betadisper")
#> Error: object 'matriz' not found