Reference

Pre-processing data. Functions used for pre process data.
collapse_table()	Collapse table Collapse an OTU/ASV table by taxonomic level
merge_feature_taxonomy()	Merge feature table and taxonomy
Alpha diversity
Abundance visualizations Functions used for abundance visualizations.
abundance_barplot()	Relative abundance barplot
abundance_heatmap_plot()	Heatmap of relative abundance
abundance_sankey_plot()	Generate a Sankey diagram from an OTU table with taxonomic information
Alpha diversity Functions used for alpha diversity index and analyses.
alpha_hill_corrplot()	Alpha diversity correlation plot
alpha_hill_plot()	Alpha diversity plot
alpha_diversity_plot()	Alpha diversity plot
Beta diversity Functions used for betadiversity analyses and visualizations.
beta_div_plot()	Beta diversity plot with multiple distance and ordination methods
beta_diversity_boxplot()	Beta Diversity Boxplot
beta_plot()	Box plot of beta diversity
beta_partition_plot()	Beta diversity partition (Jaccard/Sorensen)
beta_test_table()	Table of Permanova or Betadisper
Important taxa Functions used to identify important taxa
aldex_heatmap_plot()	Heatmap ALDEx
aldex_volcano_plot()	This function generates either an effect size plot or a volcano plot based on ALDEx2 results.
ancombc_plot()	barplot ancombc
randomf_lollipop_plot()	Generate a Lollipop plot from random forest results
ratio_plot()	Compare taxon abundance ratios between two conditions
Other functions Functions used for other analyses
cca_rda_biplot()	CCA/RDA Biplot with ggplot2
corr_env_abund_plot()	Plot Correlation Between Environmental Variables and Taxonomic Groups
venn_diagram_plot()	Generate a Venn diagram of taxa shared between sample groups